noone@mail.com Analysis of Dieting study 16S data % Fri Sep 7 05:46:18 2018

(1.3.1.3.4) Plots of Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'.

Plots are shown with relation to various combinations of meta data variables and in different graphical representations. Lots of plots here.

(1.3.1.3.4.2) Iterating over all combinations of grouping variables
(1.3.1.3.4.2.1) Entire pool of samples
(1.3.1.3.4.2.2) Iterating over Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. profile sorting order
(1.3.1.3.4.2.2.1) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. profile sorting order: GeneSelector paired test ranking
(1.3.1.3.4.2.2.2) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.3.1.3.4.2.2.2.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.3.1.3.4.2.2.2.1.1) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.3.1.3.4.2.2.2.1.1.0) Table 125. Data table used for plots. Data for all pooled samples. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.3.1.3.4.2.2.2.1.1.0-3232f1559dc.1.3.1.3.4.2.2.2.1.1.csv

.record.id feature abundance.diff
MG1 Bacteroides 7.617e-01
MG10 Bacteroides 2.660e-01
MG13 Bacteroides 3.967e-01
MG14 Bacteroides 3.107e-01
MG16 Bacteroides 1.107e-01
MG17 Bacteroides 1.774e-02
MG19 Bacteroides 4.189e-01
MG2 Bacteroides 1.364e-02
MG21 Bacteroides -3.465e-02
MG22 Bacteroides 7.305e-03
MG23 Bacteroides 4.999e-01
MG25 Bacteroides 4.454e-01
MG3 Bacteroides 3.984e-02
MG4 Bacteroides 5.154e-02
MG6 Bacteroides -2.668e-02
MG8 Bacteroides 2.430e-01
MG1 Prevotella -1.963e-01
MG10 Prevotella -2.046e-03
MG13 Prevotella -3.822e-01
MG14 Prevotella 1.182e-04
MG16 Prevotella -7.741e-04
MG17 Prevotella -4.224e-01
MG19 Prevotella 3.600e-04
MG2 Prevotella -3.071e-01
MG21 Prevotella 4.341e-01
MG22 Prevotella 0.000e+00
MG23 Prevotella 7.416e-04
MG25 Prevotella -4.524e-01
MG3 Prevotella 7.537e-05
MG4 Prevotella -2.758e-04
MG6 Prevotella 1.439e-02
MG8 Prevotella -2.198e-04
MG1 Unclassified_Lachnospiraceae -4.114e-02
MG10 Unclassified_Lachnospiraceae -2.516e-02
MG13 Unclassified_Lachnospiraceae -6.275e-03
MG14 Unclassified_Lachnospiraceae -5.236e-03
MG16 Unclassified_Lachnospiraceae -5.226e-02
MG17 Unclassified_Lachnospiraceae 2.362e-02
MG19 Unclassified_Lachnospiraceae -1.932e-02
MG2 Unclassified_Lachnospiraceae 6.371e-03
MG21 Unclassified_Lachnospiraceae -3.659e-02
MG22 Unclassified_Lachnospiraceae -3.498e-02
MG23 Unclassified_Lachnospiraceae -1.740e-01
MG25 Unclassified_Lachnospiraceae -7.111e-02
MG3 Unclassified_Lachnospiraceae -3.274e-02
MG4 Unclassified_Lachnospiraceae 3.615e-02
MG6 Unclassified_Lachnospiraceae -1.207e-02
MG8 Unclassified_Lachnospiraceae -5.758e-02
MG1 Alistipes -1.014e-02
MG10 Alistipes -5.340e-02
MG13 Alistipes 7.844e-02
MG14 Alistipes -5.436e-02
MG16 Alistipes 7.709e-02
MG17 Alistipes -2.614e-02
MG19 Alistipes -7.809e-02
MG2 Alistipes -2.383e-02
MG21 Alistipes -2.919e-01
MG22 Alistipes -1.128e-02
MG23 Alistipes 3.522e-02
MG25 Alistipes 1.321e-02
MG3 Alistipes 5.610e-02
MG4 Alistipes 8.061e-03
MG6 Alistipes 1.298e-01
MG8 Alistipes -5.861e-03
MG1 Faecalibacterium -1.041e-01
MG10 Faecalibacterium -2.258e-03
MG13 Faecalibacterium -1.787e-03
MG14 Faecalibacterium -2.719e-02
MG16 Faecalibacterium -3.400e-02
MG17 Faecalibacterium 7.316e-02
MG19 Faecalibacterium 5.239e-03
MG2 Faecalibacterium -3.462e-02
MG21 Faecalibacterium 2.146e-02
MG22 Faecalibacterium 6.855e-03
MG23 Faecalibacterium 3.286e-02
MG25 Faecalibacterium 1.222e-02
MG3 Faecalibacterium -2.687e-02
MG4 Faecalibacterium 7.401e-04
MG6 Faecalibacterium -1.708e-02
MG8 Faecalibacterium -3.367e-02
MG1 Ruminococcus -1.027e-02
MG10 Ruminococcus -1.068e-02
MG13 Ruminococcus -2.415e-03
MG14 Ruminococcus -2.061e-01
MG16 Ruminococcus -2.034e-02
MG17 Ruminococcus 9.653e-04
MG19 Ruminococcus -2.749e-01
MG2 Ruminococcus -7.761e-02
MG21 Ruminococcus -2.820e-02
MG22 Ruminococcus -2.834e-02
MG23 Ruminococcus -1.404e-02
MG25 Ruminococcus -7.226e-03
MG3 Ruminococcus -1.566e-02
MG4 Ruminococcus -7.882e-04
MG6 Ruminococcus -1.647e-02
MG8 Ruminococcus -3.235e-02
MG1 Unclassified_Ruminococcaceae -1.955e-02
MG10 Unclassified_Ruminococcaceae -7.555e-03
MG13 Unclassified_Ruminococcaceae -6.452e-03
MG14 Unclassified_Ruminococcaceae -4.490e-02
MG16 Unclassified_Ruminococcaceae 3.724e-02
MG17 Unclassified_Ruminococcaceae -2.011e-02
MG19 Unclassified_Ruminococcaceae -9.436e-03
MG2 Unclassified_Ruminococcaceae -6.545e-02
MG21 Unclassified_Ruminococcaceae -4.950e-02
MG22 Unclassified_Ruminococcaceae -8.500e-02
MG23 Unclassified_Ruminococcaceae -1.188e-02
MG25 Unclassified_Ruminococcaceae -3.833e-03
MG3 Unclassified_Ruminococcaceae 1.364e-02
MG4 Unclassified_Ruminococcaceae 1.198e-02
MG6 Unclassified_Ruminococcaceae -4.407e-02
MG8 Unclassified_Ruminococcaceae -3.095e-02
MG1 Lachnospiracea_incertae_sedis -2.327e-02
MG10 Lachnospiracea_incertae_sedis -1.409e-02
MG13 Lachnospiracea_incertae_sedis -3.013e-03
MG14 Lachnospiracea_incertae_sedis -1.058e-02
MG16 Lachnospiracea_incertae_sedis -4.078e-02
MG17 Lachnospiracea_incertae_sedis -1.633e-02
MG19 Lachnospiracea_incertae_sedis -9.921e-03
MG2 Lachnospiracea_incertae_sedis -1.422e-02
MG21 Lachnospiracea_incertae_sedis -1.811e-02
MG22 Lachnospiracea_incertae_sedis -2.543e-02
MG23 Lachnospiracea_incertae_sedis -9.998e-02
MG25 Lachnospiracea_incertae_sedis -2.360e-02
MG3 Lachnospiracea_incertae_sedis -1.418e-02
MG4 Lachnospiracea_incertae_sedis -7.983e-03
MG6 Lachnospiracea_incertae_sedis -3.827e-03
MG8 Lachnospiracea_incertae_sedis -3.930e-02
MG1 Blautia -5.711e-03
MG10 Blautia -6.873e-03
MG13 Blautia -3.336e-03
MG14 Blautia 7.219e-03
MG16 Blautia -5.801e-03
MG17 Blautia 2.582e-02
MG19 Blautia -2.680e-03
MG2 Blautia 1.526e-03
MG21 Blautia -1.662e-02
MG22 Blautia -4.277e-03
MG23 Blautia -2.719e-02
MG25 Blautia -7.755e-03
MG3 Blautia -6.103e-03
MG4 Blautia -1.325e-02
MG6 Blautia -1.584e-03
MG8 Blautia -8.450e-03
MG1 Clostridium_XI -4.156e-02
MG10 Clostridium_XI -1.364e-03
MG13 Clostridium_XI -1.101e-03
MG14 Clostridium_XI -8.970e-03
MG16 Clostridium_XI 1.626e-02
MG17 Clostridium_XI 2.134e-01
MG19 Clostridium_XI -3.572e-03
MG2 Clostridium_XI 2.757e-02
MG21 Clostridium_XI -6.454e-03
MG22 Clostridium_XI -1.298e-02
MG23 Clostridium_XI -8.245e-03
MG25 Clostridium_XI 3.541e-03
MG3 Clostridium_XI -2.699e-03
MG4 Clostridium_XI -8.117e-03
MG6 Clostridium_XI 3.040e-02
MG8 Clostridium_XI -1.457e-02
MG1 Unclassified_Clostridiales -7.789e-03
MG10 Unclassified_Clostridiales -1.056e-02
MG13 Unclassified_Clostridiales -3.162e-03
MG14 Unclassified_Clostridiales -9.065e-03
MG16 Unclassified_Clostridiales 1.718e-02
MG17 Unclassified_Clostridiales 4.695e-03
MG19 Unclassified_Clostridiales -1.325e-02
MG2 Unclassified_Clostridiales -1.452e-02
MG21 Unclassified_Clostridiales -1.104e-02
MG22 Unclassified_Clostridiales -2.911e-03
MG23 Unclassified_Clostridiales -8.657e-02
MG25 Unclassified_Clostridiales -6.723e-03
MG3 Unclassified_Clostridiales -3.429e-03
MG4 Unclassified_Clostridiales 2.881e-02
MG6 Unclassified_Clostridiales -1.221e-02
MG8 Unclassified_Clostridiales -1.023e-02
MG1 Erysipelotrichaceae_incertae_sedis 4.339e-04
MG10 Erysipelotrichaceae_incertae_sedis 0.000e+00
MG13 Erysipelotrichaceae_incertae_sedis 8.831e-04
MG14 Erysipelotrichaceae_incertae_sedis 7.169e-04
MG16 Erysipelotrichaceae_incertae_sedis -1.764e-04
MG17 Erysipelotrichaceae_incertae_sedis 3.041e-02
MG19 Erysipelotrichaceae_incertae_sedis -1.343e-03
MG2 Erysipelotrichaceae_incertae_sedis 3.759e-01
MG21 Erysipelotrichaceae_incertae_sedis 1.604e-03
MG22 Erysipelotrichaceae_incertae_sedis 6.049e-03
MG23 Erysipelotrichaceae_incertae_sedis -1.019e-03
MG25 Erysipelotrichaceae_incertae_sedis -5.157e-04
MG3 Erysipelotrichaceae_incertae_sedis 6.197e-04
MG4 Erysipelotrichaceae_incertae_sedis 2.864e-03
MG6 Erysipelotrichaceae_incertae_sedis -8.525e-04
MG8 Erysipelotrichaceae_incertae_sedis -1.649e-03
MG1 Clostridium_IV -1.685e-02
MG10 Clostridium_IV -1.818e-02
MG13 Clostridium_IV 1.277e-03
MG14 Clostridium_IV -1.915e-02
MG16 Clostridium_IV 1.347e-02
MG17 Clostridium_IV -2.218e-03
MG19 Clostridium_IV -2.359e-02
MG2 Clostridium_IV -1.223e-02

(1.3.1.3.4.2.2.2.1.1.1) Widget 137. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data for all pooled samples. Click to see HTML widget file in full window: ./1.3.1.3.4.2.2.2.1.1.1-32335e8e8dDynamic.Pivot.Table.html

(1.3.1.3.4.2.2.2.1.1.1) Widget 138. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data for all pooled samples. Click to see HTML widget file in full window: ./1.3.1.3.4.2.2.2.1.1.1-32343b58bf1Dynamic.Pivot.Table.html

(1.3.1.3.4.2.2.2.1.1.1) Table 126. Summary table. Data for all pooled samples. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.3.1.3.4.2.2.2.1.1.1-32329a33c4.1.3.1.3.4.2.2.2.1.1.csv

feature mean sd median incidence
Lachnospiracea_incertae_sedis -0.0227889 0.023286 -1.527e-02 0.0000
Ruminococcus -0.0465292 0.078953 -1.607e-02 0.0625
Bacteroides 0.2201134 0.235442 1.769e-01 0.8750
Unclassified_Firmicutes -0.0036512 0.005955 -1.920e-03 0.1250
Unclassified_Lachnospiraceae -0.0313945 0.047651 -2.895e-02 0.1875
Unclassified_Bacteria -0.0069703 0.009998 -5.680e-03 0.1875
Gemmiger -0.0040495 0.004316 -3.074e-03 0.1250
Unclassified_Ruminococcaceae -0.0209900 0.031276 -1.572e-02 0.1875
Blautia -0.0046919 0.011200 -5.756e-03 0.1875
Clostridium_IV -0.0116852 0.023921 -7.644e-03 0.2500
Coprococcus -0.0033823 0.007069 -2.060e-04 0.1875
Unclassified_Clostridiales -0.0087980 0.023797 -8.427e-03 0.1875
Bifidobacterium -0.0023009 0.010443 -5.581e-04 0.3125
Roseburia -0.0034156 0.006634 -2.271e-03 0.3125
Flavonifractor 0.0007855 0.002515 5.404e-04 0.6875
Dorea -0.0024745 0.009035 -2.781e-03 0.2500
Oscillibacter -0.0024661 0.006193 -9.675e-04 0.3750
Unclassified_Bacteroidales 0.0057247 0.016573 9.122e-04 0.6875
Barnesiella -0.0014417 0.002969 -2.871e-05 0.1250
Erysipelotrichaceae_incertae_sedis 0.0258693 0.093651 5.268e-04 0.5625
Prevotella -0.0821204 0.222521 -2.478e-04 0.3750
Faecalibacterium -0.0080659 0.038442 -2.023e-03 0.4375
Clostridium_XlVa -0.0038541 0.014843 -8.059e-04 0.3750
Alistipes -0.0098132 0.093328 -8.003e-03 0.4375
Parabacteroides 0.0061276 0.017921 7.173e-04 0.5000
Clostridium_XI 0.0113478 0.056470 -3.136e-03 0.3125
Enterococcus 0.0048155 0.017863 0.000e+00 0.4375
Odoribacter -0.0012510 0.007763 -5.440e-04 0.1250
Clostridium_XVIII -0.0017806 0.011656 -5.561e-04 0.4375
Escherichia_Shigella 0.0077273 0.032186 -1.583e-04 0.1875
Clostridium_sensu_stricto 0.0031232 0.007390 -6.895e-05 0.3750
Streptococcus -0.0025902 0.019701 -1.805e-04 0.2500
Sutterella -0.0042614 0.035009 -1.343e-04 0.3125
Unclassified_Prevotellaceae -0.0009009 0.009715 0.000e+00 0.0625
Akkermansia 0.0097306 0.039328 0.000e+00 0.2500
Megamonas -0.0141148 0.037483 0.000e+00 0.0625
Phascolarctobacterium -0.0019402 0.009370 0.000e+00 0.3125
Lactobacillus -0.0108826 0.045027 0.000e+00 0.1250
Klebsiella 0.0004337 0.001725 0.000e+00 0.2500
Unclassified_Lactobacillales 0.0092499 0.036970 0.000e+00 0.1250
Catenibacterium -0.0030511 0.012894 0.000e+00 0.0625

(1.3.1.3.4.2.2.2.1.1.1) Figure 503. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. bar_stacked plot. Image file: plots/323534a0b0e.svg.

(1.3.1.3.4.2.2.2.1.1.1) Figure 504. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. bar (sample mean) plot. Image file: plots/3236765c86c.svg.

(1.3.1.3.4.2.2.2.1.1.1) Figure 505. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/32347fa131b.svg.

(1.3.1.3.4.2.2.2.1.1.1) Figure 506. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/32355a9fb15.svg.

(1.3.1.3.4.2.2.2.1.2) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.3.1.3.4.2.2.2.1.2.1) Figure 507. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. bar (sample mean) plot. Image file: plots/3235a0b6ff7.svg.

(1.3.1.3.4.2.2.2.1.2.1) Figure 508. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/3231812b0dd.svg.

(1.3.1.3.4.2.2.2.1.2.1) Figure 509. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/323105544a6.svg.

(1.3.1.3.4.2.3) Grouping variables age.quant
(1.3.1.3.4.2.4) Iterating over Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. profile sorting order
(1.3.1.3.4.2.4.1) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. profile sorting order: GeneSelector paired test ranking
(1.3.1.3.4.2.4.2) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.3.1.3.4.2.4.2.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.3.1.3.4.2.4.2.1.1) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.3.1.3.4.2.4.2.1.1.0) Table 127. Data table used for plots. Data grouped by age.quant. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.3.1.3.4.2.4.2.1.1.0-323170d0df1.1.3.1.3.4.2.4.2.1.1.csv

.record.id age.quant feature abundance.diff
MG1 (15.3,26.4] Bacteroides 7.617e-01
MG10 (8.71,15.3] Bacteroides 2.660e-01
MG13 (15.3,26.4] Bacteroides 3.967e-01
MG14 (15.3,26.4] Bacteroides 3.107e-01
MG16 (15.3,26.4] Bacteroides 1.107e-01
MG17 (15.3,26.4] Bacteroides 1.774e-02
MG19 (6.27,8.71] Bacteroides 4.189e-01
MG2 [3.18,6.27] Bacteroides 1.364e-02
MG21 (8.71,15.3] Bacteroides -3.465e-02
MG22 (8.71,15.3] Bacteroides 7.305e-03
MG23 (6.27,8.71] Bacteroides 4.999e-01
MG25 (8.71,15.3] Bacteroides 4.454e-01
MG3 (8.71,15.3] Bacteroides 3.984e-02
MG4 (8.71,15.3] Bacteroides 5.154e-02
MG6 (8.71,15.3] Bacteroides -2.668e-02
MG8 (8.71,15.3] Bacteroides 2.430e-01
MG1 (15.3,26.4] Prevotella -1.963e-01
MG10 (8.71,15.3] Prevotella -2.046e-03
MG13 (15.3,26.4] Prevotella -3.822e-01
MG14 (15.3,26.4] Prevotella 1.182e-04
MG16 (15.3,26.4] Prevotella -7.741e-04
MG17 (15.3,26.4] Prevotella -4.224e-01
MG19 (6.27,8.71] Prevotella 3.600e-04
MG2 [3.18,6.27] Prevotella -3.071e-01
MG21 (8.71,15.3] Prevotella 4.341e-01
MG22 (8.71,15.3] Prevotella 0.000e+00
MG23 (6.27,8.71] Prevotella 7.416e-04
MG25 (8.71,15.3] Prevotella -4.524e-01
MG3 (8.71,15.3] Prevotella 7.537e-05
MG4 (8.71,15.3] Prevotella -2.758e-04
MG6 (8.71,15.3] Prevotella 1.439e-02
MG8 (8.71,15.3] Prevotella -2.198e-04
MG1 (15.3,26.4] Unclassified_Lachnospiraceae -4.114e-02
MG10 (8.71,15.3] Unclassified_Lachnospiraceae -2.516e-02
MG13 (15.3,26.4] Unclassified_Lachnospiraceae -6.275e-03
MG14 (15.3,26.4] Unclassified_Lachnospiraceae -5.236e-03
MG16 (15.3,26.4] Unclassified_Lachnospiraceae -5.226e-02
MG17 (15.3,26.4] Unclassified_Lachnospiraceae 2.362e-02
MG19 (6.27,8.71] Unclassified_Lachnospiraceae -1.932e-02
MG2 [3.18,6.27] Unclassified_Lachnospiraceae 6.371e-03
MG21 (8.71,15.3] Unclassified_Lachnospiraceae -3.659e-02
MG22 (8.71,15.3] Unclassified_Lachnospiraceae -3.498e-02
MG23 (6.27,8.71] Unclassified_Lachnospiraceae -1.740e-01
MG25 (8.71,15.3] Unclassified_Lachnospiraceae -7.111e-02
MG3 (8.71,15.3] Unclassified_Lachnospiraceae -3.274e-02
MG4 (8.71,15.3] Unclassified_Lachnospiraceae 3.615e-02
MG6 (8.71,15.3] Unclassified_Lachnospiraceae -1.207e-02
MG8 (8.71,15.3] Unclassified_Lachnospiraceae -5.758e-02
MG1 (15.3,26.4] Alistipes -1.014e-02
MG10 (8.71,15.3] Alistipes -5.340e-02
MG13 (15.3,26.4] Alistipes 7.844e-02
MG14 (15.3,26.4] Alistipes -5.436e-02
MG16 (15.3,26.4] Alistipes 7.709e-02
MG17 (15.3,26.4] Alistipes -2.614e-02
MG19 (6.27,8.71] Alistipes -7.809e-02
MG2 [3.18,6.27] Alistipes -2.383e-02
MG21 (8.71,15.3] Alistipes -2.919e-01
MG22 (8.71,15.3] Alistipes -1.128e-02
MG23 (6.27,8.71] Alistipes 3.522e-02
MG25 (8.71,15.3] Alistipes 1.321e-02
MG3 (8.71,15.3] Alistipes 5.610e-02
MG4 (8.71,15.3] Alistipes 8.061e-03
MG6 (8.71,15.3] Alistipes 1.298e-01
MG8 (8.71,15.3] Alistipes -5.861e-03
MG1 (15.3,26.4] Faecalibacterium -1.041e-01
MG10 (8.71,15.3] Faecalibacterium -2.258e-03
MG13 (15.3,26.4] Faecalibacterium -1.787e-03
MG14 (15.3,26.4] Faecalibacterium -2.719e-02
MG16 (15.3,26.4] Faecalibacterium -3.400e-02
MG17 (15.3,26.4] Faecalibacterium 7.316e-02
MG19 (6.27,8.71] Faecalibacterium 5.239e-03
MG2 [3.18,6.27] Faecalibacterium -3.462e-02
MG21 (8.71,15.3] Faecalibacterium 2.146e-02
MG22 (8.71,15.3] Faecalibacterium 6.855e-03
MG23 (6.27,8.71] Faecalibacterium 3.286e-02
MG25 (8.71,15.3] Faecalibacterium 1.222e-02
MG3 (8.71,15.3] Faecalibacterium -2.687e-02
MG4 (8.71,15.3] Faecalibacterium 7.401e-04
MG6 (8.71,15.3] Faecalibacterium -1.708e-02
MG8 (8.71,15.3] Faecalibacterium -3.367e-02
MG1 (15.3,26.4] Ruminococcus -1.027e-02
MG10 (8.71,15.3] Ruminococcus -1.068e-02
MG13 (15.3,26.4] Ruminococcus -2.415e-03
MG14 (15.3,26.4] Ruminococcus -2.061e-01
MG16 (15.3,26.4] Ruminococcus -2.034e-02
MG17 (15.3,26.4] Ruminococcus 9.653e-04
MG19 (6.27,8.71] Ruminococcus -2.749e-01
MG2 [3.18,6.27] Ruminococcus -7.761e-02
MG21 (8.71,15.3] Ruminococcus -2.820e-02
MG22 (8.71,15.3] Ruminococcus -2.834e-02
MG23 (6.27,8.71] Ruminococcus -1.404e-02
MG25 (8.71,15.3] Ruminococcus -7.226e-03
MG3 (8.71,15.3] Ruminococcus -1.566e-02
MG4 (8.71,15.3] Ruminococcus -7.882e-04
MG6 (8.71,15.3] Ruminococcus -1.647e-02
MG8 (8.71,15.3] Ruminococcus -3.235e-02
MG1 (15.3,26.4] Unclassified_Ruminococcaceae -1.955e-02
MG10 (8.71,15.3] Unclassified_Ruminococcaceae -7.555e-03
MG13 (15.3,26.4] Unclassified_Ruminococcaceae -6.452e-03
MG14 (15.3,26.4] Unclassified_Ruminococcaceae -4.490e-02
MG16 (15.3,26.4] Unclassified_Ruminococcaceae 3.724e-02
MG17 (15.3,26.4] Unclassified_Ruminococcaceae -2.011e-02
MG19 (6.27,8.71] Unclassified_Ruminococcaceae -9.436e-03
MG2 [3.18,6.27] Unclassified_Ruminococcaceae -6.545e-02
MG21 (8.71,15.3] Unclassified_Ruminococcaceae -4.950e-02
MG22 (8.71,15.3] Unclassified_Ruminococcaceae -8.500e-02
MG23 (6.27,8.71] Unclassified_Ruminococcaceae -1.188e-02
MG25 (8.71,15.3] Unclassified_Ruminococcaceae -3.833e-03
MG3 (8.71,15.3] Unclassified_Ruminococcaceae 1.364e-02
MG4 (8.71,15.3] Unclassified_Ruminococcaceae 1.198e-02
MG6 (8.71,15.3] Unclassified_Ruminococcaceae -4.407e-02
MG8 (8.71,15.3] Unclassified_Ruminococcaceae -3.095e-02
MG1 (15.3,26.4] Lachnospiracea_incertae_sedis -2.327e-02
MG10 (8.71,15.3] Lachnospiracea_incertae_sedis -1.409e-02
MG13 (15.3,26.4] Lachnospiracea_incertae_sedis -3.013e-03
MG14 (15.3,26.4] Lachnospiracea_incertae_sedis -1.058e-02
MG16 (15.3,26.4] Lachnospiracea_incertae_sedis -4.078e-02
MG17 (15.3,26.4] Lachnospiracea_incertae_sedis -1.633e-02
MG19 (6.27,8.71] Lachnospiracea_incertae_sedis -9.921e-03
MG2 [3.18,6.27] Lachnospiracea_incertae_sedis -1.422e-02
MG21 (8.71,15.3] Lachnospiracea_incertae_sedis -1.811e-02
MG22 (8.71,15.3] Lachnospiracea_incertae_sedis -2.543e-02
MG23 (6.27,8.71] Lachnospiracea_incertae_sedis -9.998e-02
MG25 (8.71,15.3] Lachnospiracea_incertae_sedis -2.360e-02
MG3 (8.71,15.3] Lachnospiracea_incertae_sedis -1.418e-02
MG4 (8.71,15.3] Lachnospiracea_incertae_sedis -7.983e-03
MG6 (8.71,15.3] Lachnospiracea_incertae_sedis -3.827e-03
MG8 (8.71,15.3] Lachnospiracea_incertae_sedis -3.930e-02
MG1 (15.3,26.4] Blautia -5.711e-03
MG10 (8.71,15.3] Blautia -6.873e-03
MG13 (15.3,26.4] Blautia -3.336e-03
MG14 (15.3,26.4] Blautia 7.219e-03
MG16 (15.3,26.4] Blautia -5.801e-03
MG17 (15.3,26.4] Blautia 2.582e-02
MG19 (6.27,8.71] Blautia -2.680e-03
MG2 [3.18,6.27] Blautia 1.526e-03
MG21 (8.71,15.3] Blautia -1.662e-02
MG22 (8.71,15.3] Blautia -4.277e-03
MG23 (6.27,8.71] Blautia -2.719e-02
MG25 (8.71,15.3] Blautia -7.755e-03
MG3 (8.71,15.3] Blautia -6.103e-03
MG4 (8.71,15.3] Blautia -1.325e-02
MG6 (8.71,15.3] Blautia -1.584e-03
MG8 (8.71,15.3] Blautia -8.450e-03
MG1 (15.3,26.4] Clostridium_XI -4.156e-02
MG10 (8.71,15.3] Clostridium_XI -1.364e-03
MG13 (15.3,26.4] Clostridium_XI -1.101e-03
MG14 (15.3,26.4] Clostridium_XI -8.970e-03
MG16 (15.3,26.4] Clostridium_XI 1.626e-02
MG17 (15.3,26.4] Clostridium_XI 2.134e-01
MG19 (6.27,8.71] Clostridium_XI -3.572e-03
MG2 [3.18,6.27] Clostridium_XI 2.757e-02
MG21 (8.71,15.3] Clostridium_XI -6.454e-03
MG22 (8.71,15.3] Clostridium_XI -1.298e-02
MG23 (6.27,8.71] Clostridium_XI -8.245e-03
MG25 (8.71,15.3] Clostridium_XI 3.541e-03
MG3 (8.71,15.3] Clostridium_XI -2.699e-03
MG4 (8.71,15.3] Clostridium_XI -8.117e-03
MG6 (8.71,15.3] Clostridium_XI 3.040e-02
MG8 (8.71,15.3] Clostridium_XI -1.457e-02
MG1 (15.3,26.4] Unclassified_Clostridiales -7.789e-03
MG10 (8.71,15.3] Unclassified_Clostridiales -1.056e-02
MG13 (15.3,26.4] Unclassified_Clostridiales -3.162e-03
MG14 (15.3,26.4] Unclassified_Clostridiales -9.065e-03
MG16 (15.3,26.4] Unclassified_Clostridiales 1.718e-02
MG17 (15.3,26.4] Unclassified_Clostridiales 4.695e-03
MG19 (6.27,8.71] Unclassified_Clostridiales -1.325e-02
MG2 [3.18,6.27] Unclassified_Clostridiales -1.452e-02
MG21 (8.71,15.3] Unclassified_Clostridiales -1.104e-02
MG22 (8.71,15.3] Unclassified_Clostridiales -2.911e-03
MG23 (6.27,8.71] Unclassified_Clostridiales -8.657e-02
MG25 (8.71,15.3] Unclassified_Clostridiales -6.723e-03
MG3 (8.71,15.3] Unclassified_Clostridiales -3.429e-03
MG4 (8.71,15.3] Unclassified_Clostridiales 2.881e-02
MG6 (8.71,15.3] Unclassified_Clostridiales -1.221e-02
MG8 (8.71,15.3] Unclassified_Clostridiales -1.023e-02
MG1 (15.3,26.4] Erysipelotrichaceae_incertae_sedis 4.339e-04
MG10 (8.71,15.3] Erysipelotrichaceae_incertae_sedis 0.000e+00
MG13 (15.3,26.4] Erysipelotrichaceae_incertae_sedis 8.831e-04
MG14 (15.3,26.4] Erysipelotrichaceae_incertae_sedis 7.169e-04
MG16 (15.3,26.4] Erysipelotrichaceae_incertae_sedis -1.764e-04
MG17 (15.3,26.4] Erysipelotrichaceae_incertae_sedis 3.041e-02
MG19 (6.27,8.71] Erysipelotrichaceae_incertae_sedis -1.343e-03
MG2 [3.18,6.27] Erysipelotrichaceae_incertae_sedis 3.759e-01
MG21 (8.71,15.3] Erysipelotrichaceae_incertae_sedis 1.604e-03
MG22 (8.71,15.3] Erysipelotrichaceae_incertae_sedis 6.049e-03
MG23 (6.27,8.71] Erysipelotrichaceae_incertae_sedis -1.019e-03
MG25 (8.71,15.3] Erysipelotrichaceae_incertae_sedis -5.157e-04
MG3 (8.71,15.3] Erysipelotrichaceae_incertae_sedis 6.197e-04
MG4 (8.71,15.3] Erysipelotrichaceae_incertae_sedis 2.864e-03
MG6 (8.71,15.3] Erysipelotrichaceae_incertae_sedis -8.525e-04
MG8 (8.71,15.3] Erysipelotrichaceae_incertae_sedis -1.649e-03
MG1 (15.3,26.4] Clostridium_IV -1.685e-02
MG10 (8.71,15.3] Clostridium_IV -1.818e-02
MG13 (15.3,26.4] Clostridium_IV 1.277e-03
MG14 (15.3,26.4] Clostridium_IV -1.915e-02
MG16 (15.3,26.4] Clostridium_IV 1.347e-02
MG17 (15.3,26.4] Clostridium_IV -2.218e-03
MG19 (6.27,8.71] Clostridium_IV -2.359e-02
MG2 [3.18,6.27] Clostridium_IV -1.223e-02

(1.3.1.3.4.2.4.2.1.1.1) Widget 139. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by age.quant. Click to see HTML widget file in full window: ./1.3.1.3.4.2.4.2.1.1.1-3231e461627Dynamic.Pivot.Table.html

(1.3.1.3.4.2.4.2.1.1.1) Widget 140. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by age.quant. Click to see HTML widget file in full window: ./1.3.1.3.4.2.4.2.1.1.1-323578f1f4Dynamic.Pivot.Table.html

(1.3.1.3.4.2.4.2.1.1.1) Table 128. Summary table. Data grouped by age.quant. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.3.1.3.4.2.4.2.1.1.1-32349f660cd.1.3.1.3.4.2.4.2.1.1.csv

feature age.quant mean sd median incidence
Lachnospiracea_incertae_sedis [3.18,6.27] -1.422e-02 NA -1.422e-02 0.000
Lachnospiracea_incertae_sedis (6.27,8.71] -5.495e-02 6.368e-02 -5.495e-02 0.000
Lachnospiracea_incertae_sedis (8.71,15.3] -1.832e-02 1.115e-02 -1.615e-02 0.000
Lachnospiracea_incertae_sedis (15.3,26.4] -1.879e-02 1.437e-02 -1.633e-02 0.000
Ruminococcus [3.18,6.27] -7.761e-02 NA -7.761e-02 0.000
Ruminococcus (6.27,8.71] -1.445e-01 1.845e-01 -1.445e-01 0.000
Ruminococcus (8.71,15.3] -1.747e-02 1.126e-02 -1.607e-02 0.000
Ruminococcus (15.3,26.4] -4.763e-02 8.897e-02 -1.027e-02 0.200
Bacteroides [3.18,6.27] 1.364e-02 NA 1.364e-02 1.000
Bacteroides (6.27,8.71] 4.594e-01 5.730e-02 4.594e-01 1.000
Bacteroides (8.71,15.3] 1.240e-01 1.738e-01 4.569e-02 0.750
Bacteroides (15.3,26.4] 3.195e-01 2.899e-01 3.107e-01 1.000
Unclassified_Firmicutes [3.18,6.27] 2.682e-03 NA 2.682e-03 1.000
Unclassified_Firmicutes (6.27,8.71] -4.439e-03 3.877e-03 -4.439e-03 0.000
Unclassified_Firmicutes (8.71,15.3] -2.638e-03 3.461e-03 -1.796e-03 0.125
Unclassified_Firmicutes (15.3,26.4] -6.223e-03 9.361e-03 -2.556e-03 0.000
Unclassified_Lachnospiraceae [3.18,6.27] 6.371e-03 NA 6.371e-03 1.000
Unclassified_Lachnospiraceae (6.27,8.71] -9.666e-02 1.094e-01 -9.666e-02 0.000
Unclassified_Lachnospiraceae (8.71,15.3] -2.926e-02 3.217e-02 -3.386e-02 0.125
Unclassified_Lachnospiraceae (15.3,26.4] -1.626e-02 3.052e-02 -6.275e-03 0.200
Unclassified_Bacteria [3.18,6.27] -3.410e-02 NA -3.410e-02 0.000
Unclassified_Bacteria (6.27,8.71] -1.937e-03 1.687e-02 -1.937e-03 0.500
Unclassified_Bacteria (8.71,15.3] -5.873e-03 6.914e-03 -4.687e-03 0.250
Unclassified_Bacteria (15.3,26.4] -5.312e-03 4.187e-03 -5.432e-03 0.000
Gemmiger [3.18,6.27] -8.569e-03 NA -8.569e-03 0.000
Gemmiger (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.000
Gemmiger (8.71,15.3] -4.468e-03 3.641e-03 -4.292e-03 0.000
Gemmiger (15.3,26.4] -4.096e-03 5.745e-03 -2.099e-03 0.400
Unclassified_Ruminococcaceae [3.18,6.27] -6.545e-02 NA -6.545e-02 0.000
Unclassified_Ruminococcaceae (6.27,8.71] -1.066e-02 1.728e-03 -1.066e-02 0.000
Unclassified_Ruminococcaceae (8.71,15.3] -2.441e-02 3.425e-02 -1.925e-02 0.250
Unclassified_Ruminococcaceae (15.3,26.4] -1.076e-02 3.022e-02 -1.955e-02 0.200
Blautia [3.18,6.27] 1.526e-03 NA 1.526e-03 1.000
Blautia (6.27,8.71] -1.494e-02 1.733e-02 -1.494e-02 0.000
Blautia (8.71,15.3] -8.115e-03 4.811e-03 -7.314e-03 0.000
Blautia (15.3,26.4] 3.639e-03 1.351e-02 -3.336e-03 0.400
Clostridium_IV [3.18,6.27] -1.223e-02 NA -1.223e-02 0.000
Clostridium_IV (6.27,8.71] -2.505e-02 2.073e-03 -2.505e-02 0.000
Clostridium_IV (8.71,15.3] -1.264e-02 3.216e-02 -2.110e-03 0.250
Clostridium_IV (15.3,26.4] -4.694e-03 1.349e-02 -2.218e-03 0.400
Coprococcus [3.18,6.27] -1.586e-02 NA -1.586e-02 0.000
Coprococcus (6.27,8.71] -7.945e-04 7.438e-04 -7.945e-04 0.000
Coprococcus (8.71,15.3] -1.275e-03 2.872e-03 -7.172e-05 0.375
Coprococcus (15.3,26.4] -5.294e-03 1.082e-02 -1.415e-04 0.000
Unclassified_Clostridiales [3.18,6.27] -1.452e-02 NA -1.452e-02 0.000
Unclassified_Clostridiales (6.27,8.71] -4.991e-02 5.185e-02 -4.991e-02 0.000
Unclassified_Clostridiales (8.71,15.3] -3.537e-03 1.354e-02 -8.478e-03 0.125
Unclassified_Clostridiales (15.3,26.4] 3.716e-04 1.083e-02 -3.162e-03 0.400
Bifidobacterium [3.18,6.27] 6.897e-04 NA 6.897e-04 1.000
Bifidobacterium (6.27,8.71] -5.487e-03 2.199e-03 -5.487e-03 0.000
Bifidobacterium (8.71,15.3] 8.611e-04 8.187e-03 -7.430e-04 0.125
Bifidobacterium (15.3,26.4] -6.684e-03 1.546e-02 6.071e-05 0.600
Roseburia [3.18,6.27] 4.037e-03 NA 4.037e-03 1.000
Roseburia (6.27,8.71] -1.041e-02 1.345e-02 -1.041e-02 0.000
Roseburia (8.71,15.3] -4.341e-03 5.636e-03 -3.443e-03 0.250
Roseburia (15.3,26.4] -6.294e-04 3.804e-03 -3.237e-04 0.400
Flavonifractor [3.18,6.27] 2.029e-03 NA 2.029e-03 1.000
Flavonifractor (6.27,8.71] -2.940e-03 2.259e-03 -2.940e-03 0.000
Flavonifractor (8.71,15.3] 1.385e-03 2.379e-03 6.069e-04 0.750
Flavonifractor (15.3,26.4] 1.067e-03 2.098e-03 5.711e-04 0.800
Dorea [3.18,6.27] -1.403e-03 NA -1.403e-03 0.000
Dorea (6.27,8.71] -9.872e-03 6.873e-03 -9.872e-03 0.000
Dorea (8.71,15.3] -4.602e-03 8.677e-03 -2.781e-03 0.125
Dorea (15.3,26.4] 3.674e-03 8.867e-03 2.624e-03 0.600
Oscillibacter [3.18,6.27] -8.290e-04 NA -8.290e-04 0.000
Oscillibacter (6.27,8.71] 4.457e-03 6.021e-03 4.457e-03 1.000
Oscillibacter (8.71,15.3] -3.936e-03 6.514e-03 -1.452e-03 0.250
Oscillibacter (15.3,26.4] -3.211e-03 5.556e-03 -1.345e-03 0.400
Unclassified_Bacteroidales [3.18,6.27] 1.893e-03 NA 1.893e-03 1.000
Unclassified_Bacteroidales (6.27,8.71] 6.100e-04 1.235e-03 6.100e-04 0.500
Unclassified_Bacteroidales (8.71,15.3] 8.378e-03 2.220e-02 1.011e-03 0.750
Unclassified_Bacteroidales (15.3,26.4] 4.292e-03 1.156e-02 1.024e-04 0.600
Barnesiella [3.18,6.27] -8.290e-04 NA -8.290e-04 0.000
Barnesiella (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.000
Barnesiella (8.71,15.3] -2.328e-03 4.036e-03 -5.970e-04 0.000
Barnesiella (15.3,26.4] -7.233e-04 1.093e-03 0.000e+00 0.400
Erysipelotrichaceae_incertae_sedis [3.18,6.27] 3.759e-01 NA 3.759e-01 1.000
Erysipelotrichaceae_incertae_sedis (6.27,8.71] -1.181e-03 2.291e-04 -1.181e-03 0.000
Erysipelotrichaceae_incertae_sedis (8.71,15.3] 1.015e-03 2.485e-03 3.098e-04 0.500
Erysipelotrichaceae_incertae_sedis (15.3,26.4] 6.454e-03 1.340e-02 7.169e-04 0.800
Prevotella [3.18,6.27] -3.071e-01 NA -3.071e-01 0.000
Prevotella (6.27,8.71] 5.508e-04 2.698e-04 5.508e-04 1.000
Prevotella (8.71,15.3] -8.018e-04 2.370e-01 -1.099e-04 0.375
Prevotella (15.3,26.4] -2.003e-01 2.015e-01 -1.963e-01 0.200
Faecalibacterium [3.18,6.27] -3.462e-02 NA -3.462e-02 0.000
Faecalibacterium (6.27,8.71] 1.905e-02 1.953e-02 1.905e-02 1.000
Faecalibacterium (8.71,15.3] -4.825e-03 1.936e-02 -7.590e-04 0.500
Faecalibacterium (15.3,26.4] -1.879e-02 6.389e-02 -2.719e-02 0.200
Clostridium_XlVa [3.18,6.27] -9.550e-05 NA -9.550e-05 0.000
Clostridium_XlVa (6.27,8.71] -2.440e-02 3.210e-02 -2.440e-02 0.000
Clostridium_XlVa (8.71,15.3] -1.720e-03 8.736e-03 -4.615e-04 0.500
Clostridium_XlVa (15.3,26.4] 1.962e-04 1.381e-02 -3.149e-05 0.400
Alistipes [3.18,6.27] -2.383e-02 NA -2.383e-02 0.000
Alistipes (6.27,8.71] -2.144e-02 8.012e-02 -2.144e-02 0.500
Alistipes (8.71,15.3] -1.940e-02 1.227e-01 1.100e-03 0.500
Alistipes (15.3,26.4] 1.298e-02 6.123e-02 -1.014e-02 0.400
Parabacteroides [3.18,6.27] 1.821e-03 NA 1.821e-03 1.000
Parabacteroides (6.27,8.71] -3.209e-03 1.794e-02 -3.209e-03 0.500
Parabacteroides (8.71,15.3] 1.385e-02 2.039e-02 8.836e-03 0.625
Parabacteroides (15.3,26.4] -1.629e-03 1.239e-02 -2.052e-03 0.200
Clostridium_XI [3.18,6.27] 2.757e-02 NA 2.757e-02 1.000
Clostridium_XI (6.27,8.71] -5.909e-03 3.304e-03 -5.909e-03 0.000
Clostridium_XI (8.71,15.3] -1.529e-03 1.422e-02 -4.577e-03 0.250
Clostridium_XI (15.3,26.4] 3.561e-02 1.016e-01 -1.101e-03 0.400
Enterococcus [3.18,6.27] 7.573e-04 NA 7.573e-04 1.000
Enterococcus (6.27,8.71] 4.219e-04 9.765e-04 4.219e-04 0.500
Enterococcus (8.71,15.3] 4.363e-04 1.165e-03 0.000e+00 0.250
Enterococcus (15.3,26.4] 1.439e-02 3.205e-02 1.089e-04 0.600
Odoribacter [3.18,6.27] -2.073e-04 NA -2.073e-04 0.000
Odoribacter (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.000
Odoribacter (8.71,15.3] 4.741e-05 7.366e-03 -1.417e-03 0.125
Odoribacter (15.3,26.4] -4.038e-03 1.081e-02 -8.807e-04 0.200
Clostridium_XVIII [3.18,6.27] 4.783e-04 NA 4.783e-04 1.000
Clostridium_XVIII (6.27,8.71] -2.152e-02 2.980e-02 -2.152e-02 0.000
Clostridium_XVIII (8.71,15.3] -2.008e-04 3.322e-03 -1.013e-03 0.250
Clostridium_XVIII (15.3,26.4] 3.134e-03 6.083e-03 9.397e-04 0.800
Escherichia_Shigella [3.18,6.27] 2.236e-03 NA 2.236e-03 1.000
Escherichia_Shigella (6.27,8.71] -2.201e-04 3.112e-04 -2.201e-04 0.000
Escherichia_Shigella (8.71,15.3] -7.538e-04 1.430e-03 -3.219e-04 0.000
Escherichia_Shigella (15.3,26.4] 2.557e-02 5.745e-02 0.000e+00 0.400
Clostridium_sensu_stricto [3.18,6.27] -2.694e-03 NA -2.694e-03 0.000
Clostridium_sensu_stricto (6.27,8.71] -2.201e-04 3.112e-04 -2.201e-04 0.000
Clostridium_sensu_stricto (8.71,15.3] 5.637e-03 8.868e-03 4.218e-06 0.500
Clostridium_sensu_stricto (15.3,26.4] 1.602e-03 6.129e-03 -1.761e-04 0.400
Streptococcus [3.18,6.27] 1.532e-02 NA 1.532e-02 1.000
Streptococcus (6.27,8.71] -1.563e-03 1.588e-03 -1.563e-03 0.000
Streptococcus (8.71,15.3] -8.827e-03 2.599e-02 -1.805e-04 0.125
Streptococcus (15.3,26.4] 3.396e-03 8.344e-03 -2.743e-05 0.400
Sutterella [3.18,6.27] -4.045e-03 NA -4.045e-03 0.000
Sutterella (6.27,8.71] -1.343e-04 1.899e-04 -1.343e-04 0.000
Sutterella (8.71,15.3] -3.456e-03 4.980e-02 2.009e-03 0.500
Sutterella (15.3,26.4] -7.244e-03 1.531e-02 -1.761e-03 0.200
Unclassified_Prevotellaceae [3.18,6.27] -2.798e-02 NA -2.798e-02 0.000
Unclassified_Prevotellaceae (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.000
Unclassified_Prevotellaceae (8.71,15.3] 2.893e-03 8.726e-03 0.000e+00 0.125
Unclassified_Prevotellaceae (15.3,26.4] -1.917e-03 2.638e-03 -5.284e-04 0.000
Akkermansia [3.18,6.27] 0.000e+00 NA 0.000e+00 0.000
Akkermansia (6.27,8.71] -1.199e-03 1.315e-03 -1.199e-03 0.000
Akkermansia (8.71,15.3] 1.976e-02 5.553e-02 4.426e-05 0.500
Akkermansia (15.3,26.4] 0.000e+00 0.000e+00 0.000e+00 0.000
Megamonas [3.18,6.27] 0.000e+00 NA 0.000e+00 0.000
Megamonas (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.000
Megamonas (8.71,15.3] -1.193e-02 2.950e-02 0.000e+00 0.000
Megamonas (15.3,26.4] -2.608e-02 5.838e-02 0.000e+00 0.200
Phascolarctobacterium [3.18,6.27] 0.000e+00 NA 0.000e+00 0.000
Phascolarctobacterium (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.000
Phascolarctobacterium (8.71,15.3] 3.124e-04 5.133e-03 0.000e+00 0.375
Phascolarctobacterium (15.3,26.4] -6.708e-03 1.555e-02 0.000e+00 0.400
Lactobacillus [3.18,6.27] 5.301e-03 NA 5.301e-03 1.000
Lactobacillus (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.000
Lactobacillus (8.71,15.3] -3.624e-05 6.712e-05 0.000e+00 0.000
Lactobacillus (15.3,26.4] -3.583e-02 8.041e-02 0.000e+00 0.200
Klebsiella [3.18,6.27] 0.000e+00 NA 0.000e+00 0.000
Klebsiella (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.000
Klebsiella (8.71,15.3] 6.556e-05 1.224e-04 0.000e+00 0.250
Klebsiella (15.3,26.4] 1.283e-03 3.134e-03 0.000e+00 0.400
Unclassified_Lactobacillales [3.18,6.27] 1.479e-01 NA 1.479e-01 1.000
Unclassified_Lactobacillales (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.000
Unclassified_Lactobacillales (8.71,15.3] 0.000e+00 0.000e+00 0.000e+00 0.000
Unclassified_Lactobacillales (15.3,26.4] 2.179e-05 4.872e-05 0.000e+00 0.200
Catenibacterium [3.18,6.27] 0.000e+00 NA 0.000e+00 0.000
Catenibacterium (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.000
Catenibacterium (8.71,15.3] 8.008e-04 2.265e-03 0.000e+00 0.125
Catenibacterium (15.3,26.4] -1.104e-02 2.232e-02 0.000e+00 0.000

(1.3.1.3.4.2.4.2.1.1.1) Figure 510. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar_stacked plot. Image file: plots/323ae88b04.svg.

(1.3.1.3.4.2.4.2.1.1.1) Figure 511. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar (sample mean) plot. Image file: plots/323436b7d58.svg.

(1.3.1.3.4.2.4.2.1.1.1) Figure 512. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/323166e1dd4.svg.

(1.3.1.3.4.2.4.2.1.1.1) Figure 513. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/3234685d052.svg.

(1.3.1.3.4.2.4.2.1.2) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.3.1.3.4.2.4.2.1.2.1) Figure 514. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar (sample mean) plot. Image file: plots/3236c07c151.svg.

(1.3.1.3.4.2.4.2.1.2.1) Figure 515. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/323f348b94.svg.

(1.3.1.3.4.2.4.2.1.2.1) Figure 516. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/3235f7a28fe.svg.

(1.3.1.3.4.2.4.2.2) dodged plots. Iterating over orientation and, optionally, scaling
(1.3.1.3.4.2.4.2.2.1) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.3.1.3.4.2.4.2.2.1.1) Figure 517. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar (sample mean) plot. Image file: plots/3233cd02de0.svg.

(1.3.1.3.4.2.4.2.2.1.1) Figure 518. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/32353332408.svg.

(1.3.1.3.4.2.4.2.2.1.1) Figure 519. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/3237797918e.svg.

(1.3.1.3.4.2.4.2.2.2) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.3.1.3.4.2.4.2.2.2.1) Figure 520. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar (sample mean) plot. Image file: plots/3232e0bf65b.svg.

(1.3.1.3.4.2.4.2.2.2.1) Figure 521. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/3232fb72d17.svg.

(1.3.1.3.4.2.4.2.2.2.1) Figure 522. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/323a80a69b.svg.

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